simbad.util.pdb_util module¶

class PdbStructure[source]¶

Bases: object

Attributes

integration_box
molecular_weight
nchains
nres

Methods

from_file(input_file)
from_pdb_code(pdb_code)
get_pdb_content(pdb_code)
keep_first_chain_only()
save(pdbout[, remarks])
select_chain(chain_idx)
set_crystal_symmetry(source)
standardize()

from_file(input_file)[source]¶

from_pdb_code(pdb_code)[source]¶

static get_pdb_content(pdb_code)[source]¶

integration_box¶

keep_first_chain_only()[source]¶

molecular_weight¶

nchains¶

nres¶

save(pdbout, remarks=[])[source]¶

select_chain(chain_idx)[source]¶

set_crystal_symmetry(source)[source]¶

standardize()[source]¶